Chunks have size of zero

What do I do with this warning that came up during a check?

2020-07-20 04:08:59.990 TRACE LIST_FILES Listing chunks/0c/
2020-07-20 04:09:18.095 TRACE LIST_FILES Listing chunks/7e/
2020-07-20 04:09:24.734 TRACE LIST_FILES Listing chunks/71/
2020-07-20 04:09:31.550 WARN SNAPSHOT_CHECK Chunk 503b5fa972b9eebfe8edbadb277491711981a6da8f2e58e85afcbebd557cde1e has a size of 0
2020-07-20 04:09:31.950 WARN SNAPSHOT_CHECK Chunk ff2e38231023eac39886c90e030d287c85029cda95505d504fb484a6832824ce has a size of 0
2020-07-20 04:09:32.095 WARN SNAPSHOT_CHECK Chunk cdf5d1be5acec491a0bb5f9d06724b873b4051a60eeaea667a04c3d909b1350a has a size of 0
2020-07-20 04:09:32.570 WARN SNAPSHOT_CHECK Chunk 4693acfed00bea66dbe576108f0ce4f42923bd1b58e1f7d097c9fc28c52a5d7a has a size of 0
2020-07-20 04:09:32.607 WARN SNAPSHOT_CHECK Chunk fa5cf2ea27172aa1dfcaac086148405ba8cf7b1d81e5e990245975c081616eeb has a size of 0
2020-07-20 04:09:32.701 WARN SNAPSHOT_CHECK Chunk 5e306961cf9343e500b02f2fc8cd3582f07ae535f6cf92f85f1a3503ba7aabd1 has a size of 0
2020-07-20 04:09:32.737 WARN SNAPSHOT_CHECK Chunk 57641f50aa3b46c9851b1218889f587997d6f87356cf6cc3891ebf00d4d26f8c has a size of 0
2020-07-20 04:09:32.877 WARN SNAPSHOT_CHECK Chunk 6a70569ec575aa00e5cf873b4564b27968b17d5fa8a311c631233e529d624672 has a size of 0
2020-07-20 04:09:32.988 WARN SNAPSHOT_CHECK Chunk 7142c259fab4bf952b4fb2de3976711032557a86e6f37562f190efd738bd13f7 has a size of 0
2020-07-20 04:09:32.992 TRACE SNAPSHOT_LIST_IDS Listing all snapshot ids

I keep geteting the same warning for the same chunks (strangely, though, not in the same order):

2020-07-22 16:50:25.814 TRACE LIST_FILES Listing chunks/b2/
2020-07-22 16:50:33.104 WARN SNAPSHOT_CHECK Chunk 57641f50aa3b46c9851b1218889f587997d6f87356cf6cc3891ebf00d4d26f8c has a size of 0
2020-07-22 16:50:33.170 WARN SNAPSHOT_CHECK Chunk 4693acfed00bea66dbe576108f0ce4f42923bd1b58e1f7d097c9fc28c52a5d7a has a size of 0
2020-07-22 16:50:33.706 WARN SNAPSHOT_CHECK Chunk 503b5fa972b9eebfe8edbadb277491711981a6da8f2e58e85afcbebd557cde1e has a size of 0
2020-07-22 16:50:33.819 WARN SNAPSHOT_CHECK Chunk cdf5d1be5acec491a0bb5f9d06724b873b4051a60eeaea667a04c3d909b1350a has a size of 0
2020-07-22 16:50:34.271 WARN SNAPSHOT_CHECK Chunk 7142c259fab4bf952b4fb2de3976711032557a86e6f37562f190efd738bd13f7 has a size of 0
2020-07-22 16:50:34.510 WARN SNAPSHOT_CHECK Chunk 6a70569ec575aa00e5cf873b4564b27968b17d5fa8a311c631233e529d624672 has a size of 0
2020-07-22 16:50:34.638 WARN SNAPSHOT_CHECK Chunk ff2e38231023eac39886c90e030d287c85029cda95505d504fb484a6832824ce has a size of 0
2020-07-22 16:50:34.642 WARN SNAPSHOT_CHECK Chunk fa5cf2ea27172aa1dfcaac086148405ba8cf7b1d81e5e990245975c081616eeb has a size of 0
2020-07-22 16:50:34.772 WARN SNAPSHOT_CHECK Chunk 5e306961cf9343e500b02f2fc8cd3582f07ae535f6cf92f85f1a3503ba7aabd1 has a size of 0
2020-07-22 16:50:34.880 TRACE SNAPSHOT_LIST_IDS Listing all snapshot ids

Should I manually delete those chunks or does duplicacy eventually fix that by itself?

You’ll need to manually delete these chunk files from the storage, and then follow the guide on Fix missing chunks.

Which storage backend are you using?